MRIQC: individual T1w report

Summary

  • BIDS filename: sub-6013_ses-2_T1w.
  • Date and time: 2022-11-08, 20:18.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.6204120052823442
cnr2.1509518962428413
efc0.6154492645167462
fber1671.097223309926
fwhmavg4.507359999999999
fwhmx4.44919
fwhmy5.03673
fwhmz4.03616
icvscsf0.2204829980016974
icvsgm0.39619365595794637
icvswm0.3833233460403562
inumed1.5974597930908203
inurange0.7659766435623165
qi11.1646568571501778e-05
qi20.003226439581214258
rpvecsf23.705577739603257
rpvegm13.139324188567963
rpvewm16.592309175326623
sizex176
sizey256
sizez256
snrcsf3.3865782392446233
snrgm9.196026659211759
snrtotal10.63446225577509
snrwm19.320781868868885
snrdcsf34.024973416756005
snrdgm70.65981695354726
snrdtotal64.93068407394018
snrdwm90.10726185151725
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk17.150906952667775
summarybgmad7.270999476514654
summarybgmean14.647591351693412
summarybgmedian12.515964396297932
summarybgn2363300.0
summarybgp055.006385758519173
summarybgp9534.43167348206043
summarybgstdv10.869786741379508
summarycsfk1.8235405419032347
summarycsfmad107.5502005901126
summarycsfmean399.66834806599087
summarycsfmedian377.62452578544617
summarycsfn28788.0
summarycsfp05251.5453415811062
summarycsfp95606.9118849687276
summarycsfstdv111.50427964084714
summarygmk-0.026445837264444716
summarygmmad84.67684807024358
summarygmmean792.3212183204417
summarygmmedian784.2145691737533
summarygmn14913.0
summarygmp05665.0115025520324
summarygmp95944.5210845842957
summarygmstdv85.2746849056254
summarywmk0.3863835392977961
summarywmmad49.23072562223464
summarywmmean998.6941705729113
summarywmmedian1000.051098048687
summarywmn233142.0
summarywmp05911.3154647573829
summarywmp951081.4814949780703
summarywmstdv51.760273476946026
tpmoverlapcsf0.17715182900428772
tpmoverlapgm0.44416967034339905
tpmoverlapwm0.5089372396469116
wm2max0.5792630286466328
AcquisitionMatrixPE246
AcquisitionNumber1
AcquisitionTime11:28:59.155000
BaseResolution256
BodyPartExaminedBRAIN
CoilCombinationMethodAdaptive Combine
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20220720
Dcm2bidsVersion2.1.7
DeviceSerialNumber67034
DwellTime3e-06
EchoTime0.00169
FlipAngle7
ImageOrientationPatientDICOM[-0.0127405, 0.998117, 0.0599965, 0.0142929, 0.060177, -0.998085]
ImageOrientationTextSag>Tra(-0.9)>Cor(-0.7)
ImageType['ORIGINAL', 'PRIMARY', 'OTHER', 'ND', 'NORM', 'MEAN']
ImagingFrequency123.258
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressFairbanks 710,Chicago ,Chicago,US,60611
InstitutionNameNU Tuna
InstitutionalDepartmentNameDepartment
InversionTime1.16
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
MatrixCoilModeGRAPPA
ModalityMR
NonlinearGradientCorrectionTrue
NumberOfAverages3
ParallelReductionFactorInPlane2
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling96
PhaseEncodingSteps185
PhaseResolution0.96
PixelBandwidth650
ProcedureStepDescriptionfMRI_STUDIES^MITTAL
ProtocolNametfl_epinav_ME3_1mm_p2
PulseSequenceDetails%CustomerSeq%\tfl_mgh_epinav_ABCD
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE256
RefLinesPE36
RepetitionTime2.17
SAR0.0353398
ScanOptionsIR\PFP\WE
ScanningSequenceGR\IR
SequenceNametfl3d3_16ns
SequenceVariantSK\SP\MP\OSP
SeriesDescriptiontfl_epinav_ME3_1mm_p2 RMS
SeriesNumber19
ShimSetting[2633, 5472, -7489, 148, -92, -1001, 85, -147]
SliceThickness1
SoftwareVersionssyngo MR E11
SpoilingStateTrue
StationNameMRC35427
TxRefAmp243.115
WipMemBlockPrisma_epi_moco_navigator_ABCD_tfl.prot
md5sum502cca0f61d7dc83d90ea3764ae95f5d
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.